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Creators/Authors contains: "Epps, Clinton"

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  1. Remote sensing can provide continuous spatiotemporal information about vegetation to inform wildlife habitat estimates, but these methods are often limited in availability or lack adequate resolution to capture the three‐dimensional vegetative details critical for understanding habitat. The Global Ecosystem Dynamics Investigation (GEDI) is a spaceborne light detection and ranging system (LiDAR) that has revolutionized the availability of high‐quality three‐dimensional vegetation measurements of the Earth's temperate and tropical forests. To date, wildlife‐related applications of GEDI data or GEDI‐fusion products have been limited to estimate species habitat use, distribution, and diversity. Here, our goal was to expand the use of GEDI‐based applications to wildlife demography by evaluating if GEDI data fusions could aid in characterizing demographic parameters of wildlife. We leveraged a recently published dataset of GEDI‐fusion forest structures and capture–mark–recapture data to estimate the density and survival of two small mammal species, Humboldt's flying squirrel (Glaucomys oregonensis) and Townsend's chipmunk (Neotamias townsendii), from three studies in western Oregon spanning 2014–2021. We used capture histories in Huggins robust design models to estimate apparent annual survival and density as a derived parameter. We found strong support that both flying squirrel and chipmunk density were associated with GEDI‐fusion forest structures of foliage height diversity and plant area volume density in the 5–10 m strata for flying squirrels and proportionately higher plant area volume density in the 0–20 m strata for chipmunks, as well as other spatiotemporal factors such as elevation. We found weak support that apparent annual survival was associated with GEDI‐fusion forest structures for flying squirrels but not for chipmunks. We demonstrate further utility of these methods by creating spatially explicit density maps of both species that could aid management and conservation policies. Our work represents a novel application of GEDI data to evaluate wildlife demography and produce continuous spatially explicit density predictions for these species. We conclude that aspects of small mammal demography can be explained by forest structure as characterized via GEDI data fusions. 
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  2. In species where offspring survival is highly variable relative to adult survival, such as bighorn sheep ( Ovis canadensis ), physiological indicators of maternal investment could clarify the functional mechanisms of life history trade-offs and serve as important predictors of population dynamics. From a management perspective, simple predictors of juvenile survival measured non-lethally from maternal samples could aid in identifying at-risk populations or individuals before significant mortality occurs. Blood biochemical parameters can offer low-cost insights into animal health and physiology, therefore we sought to develop a simple biochemical predictor of juvenile survival based on maternal blood samples. We measured biochemical indicators of energy balance in adult bighorn sheep at a single time point in January or February, and then monitored survival through August of the same year to assess how those measures related to survival of individual adults and their juvenile offspring. Juvenile survival was lower over the subsequent spring and summer when maternal adult serum beta-hydroxybutyric acid (β-HBA) concentration was high, indicating a negative energy balance in the mothers. However, serum β-HBA did not correlate with adult survival over the same period. Our findings suggest that even when maternal body condition is high, short-term caloric deficit may be sufficient trigger to decrease investment in offspring survival. This mechanism could protect adult females from investing heavily in juvenile survival when resources become too limited to support population growth. Our study suggests that β-HBA could be a powerful monitoring tool for bighorn sheep and other threatened ruminant populations under resource limitation. 
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  3. Radiocarbon dating of the earliest occupational phases at the Cooper’s Ferry site in western Idaho indicates that people repeatedly occupied the Columbia River basin, starting between 16,560 and 15,280 calibrated years before the present (cal yr B.P.). Artifacts from these early occupations indicate the use of unfluted stemmed projectile point technologies before the appearance of the Clovis Paleoindian tradition and support early cultural connections with northeastern Asian Upper Paleolithic archaeological traditions. The Cooper’s Ferry site was initially occupied during a time that predates the opening of an ice-free corridor (≤14,800 cal yr B.P.), which supports the hypothesis that initial human migration into the Americas occurred via a Pacific coastal route. 
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  4. The ruminants are one of the most successful mammalian lineages, exhibiting morphological and habitat diversity and containing several key livestock species. To better understand their evolution, we generated and analyzed de novo assembled genomes of 44 ruminant species, representing all six Ruminantia families. We used these genomes to create a time-calibrated phylogeny to resolve topological controversies, overcoming the challenges of incomplete lineage sorting. Population dynamic analyses show that population declines commenced between 100,000 and 50,000 years ago, which is concomitant with expansion in human populations. We also reveal genes and regulatory elements that possibly contribute to the evolution of the digestive system, cranial appendages, immune system, metabolism, body size, cursorial locomotion, and dentition of the ruminants. 
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